Index

A

add_gene() (natural_selection.genetic_algorithms.__init__.Individual method) add_new_property() (natural_selection.__init__.Island method) (natural_selection.genetic_algorithms.__init__.Chromosome method) (natural_selection.genetic_algorithms.__init__.Gene method) (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

age (natural_selection.genetic_algorithms.__init__.Individual attribute) (natural_selection.genetic_programs.__init__.GeneticProgram attribute) alien_spawn_default() (in module natural_selection.genetic_algorithms.operators.initialisation) append() (natural_selection.genetic_algorithms.__init__.Chromosome method)

B

birthday() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

breadth() (natural_selection.genetic_programs.__init__.Node method)

C

checkpoints_dir (natural_selection.__init__.Island attribute) children (natural_selection.__init__.Island attribute) Chromosome (class in natural_selection.genetic_algorithms.__init__) clone_classic() (in module natural_selection.utils) create_chromosome() (natural_selection.__init__.Island method) create_gene() (natural_selection.__init__.Island method) create_genetic_program() (natural_selection.__init__.Island method) create_individual() (natural_selection.__init__.Island method)

create_node() (natural_selection.__init__.Island method) crossover_one_binary_union() (in module natural_selection.genetic_algorithms.operators.crossover) crossover_prob_function_classic() (in module natural_selection.utils.probability_functions) crossover_two_n_point() (in module natural_selection.genetic_algorithms.operators.crossover) crossover_two_one_point() (in module natural_selection.genetic_algorithms.operators.crossover) (in module natural_selection.genetic_programs.operators.crossover) crossover_two_two_point() (in module natural_selection.genetic_algorithms.operators.crossover) crossover_two_uniform() (in module natural_selection.genetic_algorithms.operators.crossover)

D

default_save_checkpoint_function() (in module natural_selection.utils)

depth() (natural_selection.genetic_programs.__init__.GeneticProgram method) (natural_selection.genetic_programs.__init__.Node method)

E

elites (natural_selection.__init__.Island attribute) evaluate() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method) evaluate_individual_multiproc_wrapper() (in module natural_selection.utils) evaluate_individuals_sequentially() (in module natural_selection.utils) evolve() (natural_selection.__init__.Island method) exec() (natural_selection.genetic_programs.node_operators.__init__.Operator method) (natural_selection.genetic_programs.node_operators.__init__.OperatorAdd method) (natural_selection.genetic_programs.node_operators.__init__.OperatorDiv method) (natural_selection.genetic_programs.node_operators.__init__.OperatorEq method) (natural_selection.genetic_programs.node_operators.__init__.OperatorGT method) (natural_selection.genetic_programs.node_operators.__init__.OperatorGTE method) (natural_selection.genetic_programs.node_operators.__init__.OperatorLT method) (natural_selection.genetic_programs.node_operators.__init__.OperatorLTE method) (natural_selection.genetic_programs.node_operators.__init__.OperatorMul method) (natural_selection.genetic_programs.node_operators.__init__.OperatorNE method) (natural_selection.genetic_programs.node_operators.__init__.OperatorPow method) (natural_selection.genetic_programs.node_operators.__init__.OperatorReturn method) (natural_selection.genetic_programs.node_operators.__init__.OperatorSub method)

F

fitness (natural_selection.genetic_algorithms.__init__.Individual attribute) (natural_selection.genetic_programs.__init__.GeneticProgram attribute)

G

Gene (class in natural_selection.genetic_algorithms.__init__) generation_count (natural_selection.__init__.Island attribute) generation_info (natural_selection.__init__.Island attribute) genetic_code (natural_selection.genetic_algorithms.__init__.Individual attribute) (natural_selection.genetic_programs.__init__.GeneticProgram attribute) GeneticAlgorithmError (class in natural_selection.genetic_algorithms.utils) GeneticProgram (class in natural_selection.genetic_programs.__init__) GeneticProgramError (class in natural_selection.genetic_programs.utils) get() (natural_selection.__init__.Island method) (natural_selection.genetic_algorithms.__init__.Chromosome method) (natural_selection.genetic_algorithms.__init__.Gene method) (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

get_properties() (natural_selection.__init__.Island method) (natural_selection.genetic_algorithms.__init__.Chromosome method) (natural_selection.genetic_algorithms.__init__.Gene method) (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method) get_random_string() (in module natural_selection.utils) get_subtree() (natural_selection.genetic_programs.__init__.Node method)

H

history (natural_selection.genetic_algorithms.__init__.Individual attribute) (natural_selection.genetic_programs.__init__.GeneticProgram attribute)

I

import_migrants() (natural_selection.__init__.Island method) Individual (class in natural_selection.genetic_algorithms.__init__) initialise() (natural_selection.__init__.Island method) initialise_population_full_method() (in module natural_selection.genetic_programs.operators.initialisation)

initialise_population_grow_method() (in module natural_selection.genetic_programs.operators.initialisation) initialise_population_mutation_function() (in module natural_selection.genetic_algorithms.operators.initialisation) initialise_population_random() (in module natural_selection.genetic_algorithms.operators.initialisation) Island (class in natural_selection.__init__)

L

lineage (natural_selection.__init__.Island attribute) load() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

load_island() (natural_selection.__init__.Island method)

M

max_breadth() (natural_selection.genetic_programs.__init__.Node method) mutants (natural_selection.__init__.Island attribute) mutation_prob_function_classic() (in module natural_selection.utils.probability_functions)

mutation_random_point_change() (in module natural_selection.genetic_programs.operators.mutation) mutation_randomize() (in module natural_selection.genetic_algorithms.operators.mutation) mutation_randomize_n_point() (in module natural_selection.genetic_algorithms.operators.mutation)

N

Node (class in natural_selection.genetic_programs.__init__)

O

Operator (class in natural_selection.genetic_programs.node_operators.__init__) OperatorAdd (class in natural_selection.genetic_programs.node_operators.__init__) OperatorDiv (class in natural_selection.genetic_programs.node_operators.__init__) OperatorEq (class in natural_selection.genetic_programs.node_operators.__init__) OperatorGT (class in natural_selection.genetic_programs.node_operators.__init__) OperatorGTE (class in natural_selection.genetic_programs.node_operators.__init__)

OperatorLT (class in natural_selection.genetic_programs.node_operators.__init__) OperatorLTE (class in natural_selection.genetic_programs.node_operators.__init__) OperatorMul (class in natural_selection.genetic_programs.node_operators.__init__) OperatorNE (class in natural_selection.genetic_programs.node_operators.__init__) OperatorPow (class in natural_selection.genetic_programs.node_operators.__init__) OperatorReturn (class in natural_selection.genetic_programs.node_operators.__init__) OperatorSub (class in natural_selection.genetic_programs.node_operators.__init__)

P

parents (natural_selection.__init__.Island attribute) (natural_selection.genetic_algorithms.__init__.Individual attribute) (natural_selection.genetic_programs.__init__.GeneticProgram attribute) population (natural_selection.__init__.Island attribute)

population_generational() (in module natural_selection.utils.population_growth) population_incremental() (in module natural_selection.utils.population_growth) population_steady_state_remove_oldest() (in module natural_selection.utils.population_growth) population_steady_state_remove_weakest() (in module natural_selection.utils.population_growth) post_evolution_function_save_all() (in module natural_selection.utils)

R

random_choice() (in module natural_selection.genetic_algorithms.utils.random_functions) random_gaussian() (in module natural_selection.genetic_algorithms.utils.random_functions) random_gaussian_step() (in module natural_selection.genetic_algorithms.utils.random_functions) random_generate() (in module natural_selection.genetic_programs.__init__) random_int() (in module natural_selection.genetic_algorithms.utils.random_functions) random_int_step() (in module natural_selection.genetic_algorithms.utils.random_functions) random_uniform() (in module natural_selection.genetic_algorithms.utils.random_functions) random_uniform_step() (in module natural_selection.genetic_algorithms.utils.random_functions) randomise() (natural_selection.genetic_algorithms.__init__.Gene method)

randomise_all_genes() (natural_selection.genetic_algorithms.__init__.Chromosome method) randomise_gene() (natural_selection.genetic_algorithms.__init__.Chromosome method) randomise_new() (natural_selection.genetic_algorithms.__init__.Gene method) register_parent_names() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method) reset_fitness() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method) reset_name() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

S

save() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method) save_island() (natural_selection.__init__.Island method) selection_almost_roulette_minimisation() (in module natural_selection.genetic_algorithms.operators.selection) selection_elites_top_n() (in module natural_selection.genetic_algorithms.operators.selection) selection_parents_n_gram() (in module natural_selection.genetic_algorithms.operators.selection) selection_parents_two() (in module natural_selection.genetic_algorithms.operators.selection)

selection_parents_two_shuffled() (in module natural_selection.genetic_algorithms.operators.selection) selection_random() (in module natural_selection.genetic_algorithms.operators.selection) selection_roulette() (in module natural_selection.genetic_algorithms.operators.selection) selection_survivors_all() (in module natural_selection.genetic_algorithms.operators.selection) selection_survivors_random() (in module natural_selection.genetic_algorithms.operators.selection) selection_tournament() (in module natural_selection.genetic_algorithms.operators.selection) selection_tournament_unique() (in module natural_selection.genetic_algorithms.operators.selection) set_subtree() (natural_selection.genetic_programs.__init__.Node method)

T

to_dict() (natural_selection.genetic_algorithms.__init__.Chromosome method)

to_list() (natural_selection.genetic_algorithms.__init__.Chromosome method)

U

unique_genetic_code() (natural_selection.genetic_algorithms.__init__.Individual method) (natural_selection.genetic_programs.__init__.GeneticProgram method)

unique_genome (natural_selection.__init__.Island attribute)

W

write_lineage_json() (natural_selection.__init__.Island method)

write_report() (natural_selection.__init__.Island method)